miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125436445|gb|EL448142.1|EL448142 GCACTTCAAGCAAGTGATTGTTCACTTCTGCAACTTATCACTTTATACAGCAACTTATCACAAGGGTGGTTGATTGTCTT
CACTTGAACCCTTCATCATCACATTCATTAACTTTCCTTTATATTTACCTTTAAATTTCTTCCTCCTCCTCATCATCATC
TTCTTCATCTCAACAAAATGAGAAAAGCTTAGAGCTTTTTTCAGTAGGAGCAGCAGCAGTAACAACCAATTAATTCAACA
CCAACCACTTTCACCTACGAATCCTTAACTTCAAACTCACAAATCTTGGGTTGATTTTCAAGTAACAAAAAAACACAAAA
ATGGATTCATATGAAGCAACAAGAATTGTGTTCACAAAGCTCCAAACTTTAGACCCTCAAAACGCATCCAAAATCATGGG
TCTTCTTCTCATTCAAGATCACGGTGAAAATGAAATGATTCGGATGGCCACTGCTGCAACAGCATTGATGATGGGAGAAG
AGATGAACAACTTCGGTCGGTTAAGAAACGATTTCTTGATGGGTATGGTAAACCCGGGTTCGAGGCAAATTTACCTAACT
TTTCCAGCAGATAGCTCGTTTACGGAAGAAGATGTGTCGAATTACTTCAGCATGTACGGGCCGGTTCAAGATGTTCGGAT
CCCATACCAACAGAAACGAATGTTCGGGTTTGTGAGTTTCGTGTTTGCAGAAACTGTTAAGCTCATACTCGCGAAAGGGA
ATCCGCATTTTGTATGTGAGGCGCGGGTGCTTGTGACACCATACAAAGAGAAGGCGAAAGTCCCTGATAAGTTTAGGAGG
CAGCCG




Most similar to sp|Q0D3J9|C3H53_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53
           OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2
           SV=1
          Length = 682

 Score =  194 bits (494), Expect = 5e-49
 Identities = 97/146 (66%), Positives = 113/146 (77%), Gaps = 3/146 (2%)
 Frame = +3

Query: 375 PQNASKIMGLLLIQDHGENEMIRMATAATALMMGEEMNNF---GRLRNDFLMGMVNPGSR 545
           P  A+K + LLL Q   +NE  R A AA  ++ G+E + F    RL       M+NPGSR
Sbjct: 302 PSAATKCLSLLLQQQQQQNESQRAAAAAALMLGGDEAHKFMGRPRLERADFASMMNPGSR 361

Query: 546 QIYLTFPADSSFTEEDVSNYFSMYGPVQDVRIPYQQKRMFGFVSFVFAETVKLILAKGNP 725
           QIYLTFPADS+F EEDVSNYFS+YGPV DVRIPYQQKRMFGFV+FV+ ETVKLILAKGNP
Sbjct: 362 QIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNP 421

Query: 726 HFVCEARVLVTPYKEKAKVPDKFRRQ 803
           HF+C+ARVLV PYKEK KVPDK+R+Q
Sbjct: 422 HFICDARVLVKPYKEKGKVPDKYRKQ 447